python dump

Posted by admin in Code, How To on 07. Jun, 2010 | 0 Comments

A collection of python related stuff that it’s good to remember.

Python for neuroscience / neuroinformatics

Posted by admin in Code, How To on 05. Jun, 2010 | 0 Comments

As many other enthusiastic python lovers, I believe that the supremacy of Matlab in way too many (neuro)scientific studies will decrease in the following years…

How to create a wireframe 3D model from the MNI brain template with Matlab

Posted by admin in How To on 16. Feb, 2010 | 0 Comments


In this post I am going to explain how to obtain a wireframe 3D structure out of an MRI image. For this case I am using the NI152lin_T1_2mm_brain_mask.nii.gz from the standard FSL templates. Any other 3D scan can be used (e.g. DTI images). The function that creates the wireframe is developed by Luigi Giaccari.

Linking together single fMRI volumes and extracting time series.

Posted by admin in How To on 15. Feb, 2010 | 0 Comments

How to create a 4D volume out of many EPI images for your fMRI studies.